PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv7_160720_jzkt.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HD-ZIP
Protein Properties Length: 245aa    MW: 28103.8 Da    PI: 7.5425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv7_160720_jzkt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.7e-2183137256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         + ++++t++qle Le+ F+++r+++ +++ +LA++lgL+ rqV vWFqNrRa++k
  Bv7_160720_jzkt.t1  83 KMKRRLTTNQLESLESSFQEERKLDPDRKMKLARELGLQPRQVAVWFQNRRARWK 137
                         567799************************************************9 PP

2HD-ZIP_I/II114.37.5e-3784174292
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                          krrl+++q+++LE+sF+ee+kL+p+rK++lareLglqprqvavWFqnrRAR+k+k+lE  y+aLk +++++++e+++L++ev +L++ l+
  Bv7_160720_jzkt.t1  84 MKRRLTTNQLESLESSFQEERKLDPDRKMKLARELGLQPRQVAVWFQNRRARWKAKKLEYLYDALKLEFENVSKEKQKLQDEVLKLKSMLM 174
                         59*************************************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-2158140IPR009057Homeodomain-like
PROSITE profilePS5007118.5679139IPR001356Homeobox domain
SMARTSM003892.1E-1881143IPR001356Homeobox domain
PfamPF000464.3E-1883137IPR001356Homeobox domain
CDDcd000862.20E-1783140No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2286144IPR009057Homeodomain-like
PRINTSPR000316.6E-6110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000316.6E-6119135IPR000047Helix-turn-helix motif
PfamPF021831.4E-6144173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDWNNNSDIL KNSSSAFVSC TPEISSASNL LYNINQLDSF PGLEVIKHQC SVDEMMGSNI  60
VATPSMGMGR DMIMMSFGNN QEKMKRRLTT NQLESLESSF QEERKLDPDR KMKLARELGL  120
QPRQVAVWFQ NRRARWKAKK LEYLYDALKL EFENVSKEKQ KLQDEVLKLK SMLMQQATKK  180
QVYNYTEASC EETVESTSVA IPNSDHHKNA SQAVFSRGHN NKEGHHLFNV DDYNAVSPCY  240
WGAFA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683925.11e-143PREDICTED: putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0J8C2N90.0A0A0J8C2N9_BETVU; Uncharacterized protein
STRINGVIT_08s0007g04200.t014e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-38homeobox 51